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Okay, I had some realizations about early story concepts.
>Mata Nui is not equal to the Great Spirit robot, he's only the AI controlling it
>Makuta is another AI cooperating with Mata Nui (that's why they are "borthers"), but due to a glitch Mata Nui shut down and Makuta took over
>the Great Beings aren't the creators of the GSR but the Great Spirit robots themselves (in early concepts they planned it to be six of them)
>the Red Star is another GSR
>Papu and Rangi (later renamed Great Beings) are the GSR robot and the Red Star
>the Toa are from the Rangi robot (Red Star), he sent them to fix the error inside the Papu robot
>Takua is also from the Red Star/Rangi robot (that's why the developers of MNOG and the GBA game referred to him as "the visitor"), this explains why he wasn't working like the other Matoran and instead he walked around the island helping out the Turaga and the Matoran in need, he was sent by Rangi with a special mission just like the Toa