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I don't know about the content, but for the games themselves:
>First two versions (like RB, GS, RS, etc.)for the next nintendo handheld
>Third version (like Y, C, E, etc.) for console
>the console version is of course basically the same game as always, at least as far as content goes, but the graphics are better. There is a sense of scale and you can move more freely.
>There would also be a Battle Revolution/Stadium game for this gen too on console. Could be free if you own both versions of the main game or be a part of the console game
>You can connect a handheld as a controller and to choose a team from your handheld game for local battles with friends, like BR
>if some players only have the console version they can upload a team to any pokemon amiibo and scan it to the console you are playing with