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Remember Ruby and Sapphire when Brendan/May randomly vanished midway through the game and completely stopped being relevant?
Remember when you battle Wally once at the 3rd gym then he vanishes the ENTIRE game until he magically pops up again at Victory Road?
Remember how Emerald repeated the exact same thing with zero improvements?
If XY did this people would be crying about how bland the characters are and how a Z version would totally fix it.