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Do you think Guzma was planned to own the second Cosmog and PokeSpe is rolling on discarded story ideas? Considering Pokeani and Spe seem to start planning almost parallel to the game development, seems likely.
Actually this would explain PokeSpe's sometimes darker tone, because Game Freak has been close to putting really screwed ideas in the games before tonning them down for the final release when they remember it's a family game. In one of BW manga adaptations (not Spe) N actually has the black charred arm from his concept art.