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You command <span class="mu-i">Threes</span>, the greatest Artificial-Intelligence ever invented by Jaxtian hands, to suss out and capture Consortium spies working within the Hegemony. It does this in a number of ways; using the impressive data-gathering ability already in place by the Hegemonic authority and cross referencing behavior patterns.
The tricky thing is the subversion of the AI system. The consortium spies fit in because of their own counter AIs- the Hegemony relies on AI to flag suspicious behavior for further investigation, so a counter AI that removes the flags and makes everything appear normal is how they were able to fit in. The Threemind can counter this through a massive simulation network; simulating the most likely events to happen to the personnel in the entire Hegemony, adjusting its metrics in real time based on the actual events, and finding those that don't add up. This also relied on timing; which is one of the reasons why the Threemind requested the command to be made now; this is the perfect time to find and capture the spies, when the culture of obedience is at its strongest and living members of the Hegemony have dealt with the spies.
In the end, the Threemind accurately finds and leads to the capture of about three thousand Consortium agents. All were Leraay wearing body suits. While none got as high as Alet, the fake Supreme Candidate, or the Head of Family & Homemaking Department in the government; the spies were up to no good- in fact, capturing these spies directly <span class="mu-i">foiled a plot to poison the Supreme Ruler</span>!
<span class="mu-r">”Excellent, have these ones interrogated. We'll have no more of this nonsense.”</span>
“Of course. I have also taken the liberty of collecting the alien DNA and sending it to Maktana's laboratories.”
<span class="mu-r">”Maktana- what are you using that alien DNA for?”</span>
<span class="mu-b">”Well, I figured if they could do it to us, we could do it to them- just think about it! Biodroids! Robots in meat shells- even more advanced and better at blending in then Leraay skin-suits! Artifical people stealing secrets from the Consortium!”</span>
<span class="mu-r">”Ehh... That thing kinda freaks me out...”</span>
<span class="mu-b">”Well, they aren't ready yet. But you'll see!”</span>