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You have decided to abandon your mission- for now. You'll leave the system and, if possible, return immediately once the danger of the magnetic waves dissipate. But instead of just going off the handle and doing it like the first Kimnan did- you'll tell your boss.
“Kimnan II, what are you doing? Why are you powering the warp core? You were ordered to engage?!”
<span class="mu-b">”My lord, there is no time! The magnetic waves from the destroyed Baalathi structure will-”</span>
“Say no more! The safety of you and your crew is more important then killing some gas bags! Leave the system immediately!”
<span class="mu-b">”One more thing your grace- I have also acquired the secondary objective. We can also start on the way back if you'd prefer-”</span>
“Shut up and leave the system, Kimnan!”
You'd hate to disappoint your brother, but you guess you'd be really disappointing if you were dead. Signing off on the message, you order your ship to power up. You take one last look over the Baalathi superstructure you bombed, seeing it had lost its orbit and is now falling into the gas giant and being subsumed by the gas... what a fitting way to go.
Of course, you didn't expect the structure to lose its orbit so quickly. The magnetic energy is starting to leak faster then anticipated.
<span class="mu-b">”Engage Hyperdrive!”</span>
At that exact moment, magnetic waves begin to spill from the gas giant and gently pull on your ships computer systems. You have just enough time to slip into hyperspace- with a long curve back around, it will be trivial to clean up this mess in a few days once the danger passes.