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Pros:
>Islands, felt abstract enough to encourage exploration
>Not all islands were unlocked immediately
>Contained puzzles within some of the islands themselves
>Lost Cave was a cool tribute to the Lost Woods
>Trainer Tower was something to do if you were bored, especially given the time this game was released
>It was an appropriate tribute to Johto and Hoenn (Ruby and Sapphire stones), yet still feeling new and fresh
>Acceptable post-game story
Cons:
>Lugia and Ho-oh didn't have to be event exclusive, they could have been part of the Sevii Island story
>Lack of legendary Pokemon. Legendary beats could have been encountered here, rather than a single one roaming in Kanto