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Changes that give you the ick
>Typing changes for 30+ Pokemon, with no way to obtain the originals
>fanfic stat changes
>No changes to the battle system
>Dynamic levels but no dynamic teams or substantial flexibility to the story
>Infinite TMs with strong TMs being common before the 4th gym
>Routes with encounter tables of >4 new Pokemon, especially if the routes have not been extended and no new trainer battles are present to give you more reasons to explore
>No story changes at all, or only story changes are additions of OCs or self-inserts