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Except TPC covered their asses two fold to make Team Plasma's MO in a strawman by:
1. Implying Plasma grunts don't give a shit about the cause and even take joy in hurting pokemon.
2. Implying N had to literally be brainwashed and given a curated keyhole view of the world in order to develop his point of view
and
3. Ending the story with Pokemon literally telling N they WANT to be subservient cockfighters.
What seems like a moral dilemma and a genuinely interesting talking point ends up just being treated as an elaborate way for Gamefreak/TPC to address the elephant in the room, telling us that is actually morally correct to catch Pokemon.
Legends Arceus took it even a step further by showing that humans catching Pokemon is a mandate handed down by the Pokemon god himself.