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So I came up with this nuzlocke idea in the shower that has probably already been done numerous times in the past but I want to see what you all think.
I'll call it, the Killing School Nuzlocke! Or something.
Basically imagine Danganronpa put as a nuzlocke. Every time you defeat the ace Pokemon of a boss, the Pokemon that landed the final blow is the "blackened". You then have a choice of either "executing" the blackened or "executing" everything else in your team during that fight. Obviously, E4 and the Champion doesn't apply to this rule.