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Challengers shouldn't be barred from using Megas. For what pvrpose? We bar legendaries because they have an elite stigma 'round about them, and many of them are too strong. It would be "annoying." No one disagrees with this.
Megas are a new thing: take an old pokemon and make it better (except for MAlakazam & MTyranitar who are just kinda different). They're flashy, people love them, they make you feel good when you use them. If I'm gonna be allowed to use MKangaskhan (and at times I will), why can't my opponent?
You make all these points about "not making the challenge too hard," and then you ban Megas and make it harder for them...?