How could we go about integrating Omega? Maybe as the Ultimate Weapon of Erika's Rockets. Maybe by tying it up to this
>>48933637>>48933714>>48933770Porygon plotline. What if Porygon was made as an attempt to create an AI to "boot up" Omega?
TR tried to create Mewtwo but Erika deemed it a failure for reasons, maybe because it was uncontrollable, so they decided to go for a robotization project using the Mewtwo project as a base where the creation would be always under their perfect control.
It would be like a combination of Genesect and Mewtwo's armor plotlines.