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It seems like a lot of people are posting multiple possible abilities for each pokemon. There was also talk earlier about individual moveset customization. I think that being able to select from a pokemon's abilities (ex: choosing between Iron Fist and Swarm for Ledian) in a format similar to the choice between the different assist types in MvC. This would allow players to select a play style more suited to their liking and would create more playstyles and niches for each character.
I'm also noticing a lack of Gen III pokemon, so I'm going to start work on Walrein.