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You know, I've always dreamed of wild Pokemon going way beyond random encounters and battles. Like, what if the world was huge and explorative, and to catch Pokemon you had to go into the wilderness and track them down. Some Pokemon you could go guns ablazing and confront them, some Pokemon might even try hunting you down. Others, like Clefairy or Dunsparce, would be more timid though, and likely flee if they could. You would have to track them down, sneak up on them when they're cornered, and have a good bit of luck too. Make it feel like a hunting game catching and tracking them. Since the wilderness and wild Pokemon is such a huge part of the concept it feels like you could do so much with the concept.
Sadly I know this is way too much to ask from Gamefreak,