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Mr. Jacq gives out the certificate for Pokédex completion, but wait a second! Why does he know about the other paradox Pokémon?!?
Think through all the other regions. Every other region prior either explicitly showed that all legendaries technically existed in your home universe or it was at least possible.
Using the most current versions of each region:
Kanto: No version exclusive legendaries.
Johto: No version exclusives legendaries.
Hoenn: Version exclusives clearly exist in your home universe.
Sinnoh: Version exclusives clearly exist in your home universe.
Unova: Version exclusives clearly exist in your home universe.
Kalos: Version exclusives clearly exist in your home universe.
Alola: The main legendaries clearly exist in your home universe. No reason all the ultra beast couldn’t exist in your universe.
Galar: Version exclusives clearly exist in your home universe.
Hisui: All Pokémon are catchable in your home universe.
Paldea: The version exclusive paradox mons only exist in your universe based on the time machine pulling from either the past or the future.
So, either the lore is completely a paradox or there is something big we haven’t been told. What are they hidding?