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Power Points are jewish. Pokémon should use a mana pool, with a static regen for all mons.
You should be able to promote Pokémon with low BST into higher tiers.
There should exist pokemon that can never be obtainable.
The mainline games should have different gameplay loops where players can choose to not ever battle. Pokemon should aim to be "god" games in that multiple game genres are available in one game.