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I've finally done it, /heg/. It's taken me a week, but I've fianlly changed the ??? icon to the fairy type icon.
There's two fucking copies of the ??? icon, and the first one I found doesn't actually do anything. Couldn't find a palette either, so I ended up using desemume to look at the loaded palettes. I found the right palette, used APE to convert the colors to hex and then used HxD to search for it in the rom. I found it and hex edited it to a pink color, and that worked.
No matter what I did to the icon it just didn't change. It was driving me up a wall.
What I finally did to find it was I used the address of the palette I had found before and searched through the addresses with crystal tile until I found it.
Now it's time to learn ASM so I can insert those routines meromero supplied.