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You know what I miss most when I play this game?
It's not the lack of battling directly with trainers. It's not the inability to train Pokemon. It's not the simplification of the battle system, type advantage, and moves in general.
It's that I don't have a regular six that feel like "my" Pokemon. I just have this list of nearly 200 Pokemon that changes a bit whenever I get a new high CP Pokemon that ends up on the first page.