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So, I was looking through a list of stuff from Emerald, and these are all the things left that are not outdated from the X/Y engine:
>Early Rayquaza.
>Battle Frontier. We know the battle tents are gone, but that is not a huge loss.
>The Magma Hideout.
>The Gym Leader rebattles.
>Trainer's Eyes feature in the Pokenav
>The Johto Pokemon after the Hoenn Dex is complete.
>Mew, Deoxys, Ho-Oh & Lugia Events.
>Gym Leader Teams from Emerald
>Move Tutors
>If Juan will have a role and if Wallace will play any major role with the E4.
>Mirage Tower, Trainer Hill, Expanded Safari Zone, and Desert Underpass.
>How berries are done on the overworld.
>Team Aqua/Magma event at Mossdeep.
What do you think will be in it? Probably anything irrelevant will be cut or modified (like the desert underpass being used for Ditto or the expanded Safari Zone section with the Colosseum Pokemon in it).