>>16811147But you continue on working in your team.
All the warriors and his or her Pokémon are registered, and for Wireless battle, you can set a certain limit to the Link between them.
In the post chapters, if you recruit a Warrior that you already recruit in the "Main" Story (More like a tutorial), then it will have the same Pokémon than before.
This allow you to bipass the annoying Ninja episodes with the Set types of the wild Pokémon.
This said, at least for me, the Main Story was "Two Heroes of Ransei" actually, the IA is noticeably upgraded.