Kek, tumblr made a rom hack and incorporated a feature where you don't have to specify your gender.

>"Pokemon Reborn is a Pokemon standalone hack that completely revamps the game, gives it a killer storyline, and incorporates a wide range of characters, gameplay changes, and THIS GEM of an idea that was implemented in one of the latest updates.

I would recommend everyone at least give this game a try and support it if you can- there are quite a few wonderfully inclusive choices of protagonists beyond just the regular female/male choices that are popular/regular in most games."