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>improve the search/filters of the GTS, give you the ability to see the summary of the mons before trading
>held item trade evolution changed to be held item level up evolution, normal trade evolutions also get an item to make it possible (possibly with a requirement, like having already own the resulting evolution)
>Trick Room, Tailwind and such have field animations that are dependant on how long they've been active (ex: last turn of trick room, the 'room' seems more unstable than the first, last turn of rain there is less rain than the first, and so on)
>checking the summary of your pokemon during a battle shows you the current stage of a stat, if a change was made (ex:a blue 2 next to attack if it was raised by 2 stages, a red 1 if it was lowered by 1 stage)
>add some quest or something to make the IV/Hidden Power Judge give you a key item or teach you, so you can judge IVs/HP by yourself at the summary or something.
>add the option to see the summary of a pokemon right after you catch it, before sending it to the box
>pokedex shows you the " base stats" of the pokemon/form you want, provided you already own it and allows you to compare it with other pokemon (not the actual numbers, but the 'shape', like they show in super training)
>pokedex registers the moves your pokemon learns so you can check at which level that species learns what move and what not
>pokedex keeps track of your breeding, like you can check which pokemon you have already bred together and which moves they passed onto the child, etc, allowing you to have a register of "egg groups" and stuff like that
>change the animations of things like Xatu or Skarmory that are just gliding there, looking dumb