>>28569409I imagine the process might put the Pokemon in some kind of dream state despite being converted into energy and data, perhaps a sort of brainwashing as well, seeing as how feral Pokemon immediately become friendly after being captured.
As for PCs, it's just as likely they are treated like digimon, and have a 'virtual' home to live in, rather than being in a constant 'coma' state, since they can be turned into data it's very possible to imagine they can still exist within a digitized world, after all, Porygon is a living program, showing that in the universe of Pokemon, data and flesh can be interchangeable