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Poor gameplay in certain aspects. Can't really teambuild, and outside of Level 1, a lot of it is too easy. Underwhelming bosses.
Not a bad game though, it's pretty high up there, definitely great, but it's definitely not perfect enough to be the "best". I'd personally vouch for HGSS. And I know people are going to freak out over praising anything main series, but I like them both, so tough luck.
Super has better gameplay in everything except the Level 1 (or 5, rather), and ironically has even worse teambuilding. For PMD, it's really a mix as to whether you like Explorers of Sky or Super more.