>>55603530At worst they are bored or mildly annoyed. Most Pokémon probably don't care. When you check your Pokémon's memories, some of the them can be about their time in Boxes if you keep them boxed often. I always box all Event, Gift, Legendary and any other kind of special Pokémon with the sole exception of my "First Partner" Pokémon. I remember once I checked my Eternatus's memory and it said something about how it was talking with my Event Galarian Ponyta also in the same Box. So Pokémon experience the Box as a place where they can be with other the Pokémon there.
>>55603557I'm guessing the same way Pokémon can also canonically their Poké Ball whenever they want.