There's a list of cards that appeared in Pokémon Diamond & Pearl era.

Bulbasaur/Ivysaur/Venusaur (Shining Darkness)
Charmander/Charmeleon/Charizard (Shining Darkness)
Squirtle/Wartortle/Blastoise (Shining Darkness)
Caterpie/Metapod/Butterfree (Dawn Dash)
Weedle/Kakuna/Beedrill (Moonlit Pursuit)
Pidgey/Pidgeotto/Pidgeot (Shining Darkness)
Rattata/Raticate (Shining Darkness)
Spearow/Fearow (Moonlit Pursuit)
Ekans/Arbok (Dawn Dash)
Pikachu/Raichu (Secret of the Lakes/Intense Fight in the Destroyed Sky)
Sandshrew/Sandslash (Secret of the Lakes)
NidoranF/Nidorina/Nidoqueen (Secret of the Lakes)
NidoranM/Nidorino/Nidoking (Shining Darkness)
Clefairy (Space-Time Creation/Shining Darkness)
Clefable (Space-Time Creation)
Vulpix/Ninetales (Secret of the Lakes)
Jigglypuff/Wigglytuff (Dawn Dash)
Zubat/Golbat (Secret of the Lakes)
Oddish/Gloom (Cry from the Mysterious/Temple of Anger)
Vileplume (Cry from the Mysterious)
Paras/Parasect (Secret of the Lakes)
Venonat/Venomoth (Shining Darkness)
Diglett/Dugtrio (Shining Darkness)
Meowth/Persian (Temple of Anger)
Psyduck/Golduck (Shining Darkness)
Mankey/Primeape (Dawn Dash)
Growlithe/Arcanine (Shining Darkness)
Poliwag/Poliwhirl/Poliwrath (Cry from the Mysterious)
Abra/Alakazam (Secret of the Lakes)
Machop/Machoke/Machamp (Space-Time Creation/Intense Fight in the Destroyed Sky)
Bellsprout/Weepinbell/Victreebel (Cry from the Mysterious)
Tentacool/Tentacruel (Cry from the Mysterious)
Geodude/Graveler (Secret of the Lakes)
Golem (Shining Darkness)
Ponyta/Rapidash (Space-Time Creation/Intense Fight in the Destroyed Sky)
Slowpoke/Slowbro (Moonlit Pursuit)