>>2294223Madoka is a god and can do all those things like saving magical girls and rewriting universes because of Homura, without her Madoka could never do those things.
Madoka knows this, she also knows about all the endless time loops of suffering Homura went through for Madoka.
At least she did know those things before being ripped from LoC.
Madoka definitely treasures Homura. this was shown in her attempt to save Homura from the incubators isolation field.