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Some suggestions.
>open world
>start game in the center of the region
>the further away you get from the center, the stronger the pokemon are
>you can go in whichever direction you want, whenever you want
>no particular gym order, the level is scaling depending on your progress
>every area has its own set of unique wild pokemon, no zubat, magicarp spam etc.
>no high grass encounters, all wild pokemon are visible in the overworld, wandering around, some are hidden and you have to find them
>get rid of round based battles, after 20 years its fucking boring, same shit over and over
>real time battles or semi real time, see xenoblade combat system
>while in battle, you can switch between controlling your trainer and your pokemon whenever you want, for using items etc.
>some pokemon are very aggressive and try to attack you (the trainer), you have to try to prevent that with your pokemon or by running away
>LORE everywhere
>many quests like in an RPG, some requiered in order to catch legendaries and find out lore stuff
Basically Breath of the Wild but better and with Pokemon.